J3_3J6X_045
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1840, 3J6X|1|2S|A|1841
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_045 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.1751
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|2S|G|1488
3J6X|1|2S|A|1489
3J6X|1|2S|A|1490
3J6X|1|2S|A|1491
*
3J6X|1|2S|U|1837
3J6X|1|2S|G|1838
3J6X|1|2S|A|1839
3J6X|1|2S|U|1840
3J6X|1|2S|A|1841
3J6X|1|2S|A|1842
3J6X|1|2S|C|1843
*
3J6X|1|2S|G|1852
3J6X|1|2S|U|1853
3J6X|1|2S|C|1854
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 74
- 60S ribosomal protein L34
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: