J3_3J6Y_010
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1754
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|1S|U|1283
3J6Y|1|1S|C|1284
3J6Y|1|1S|U|1285
3J6Y|1|1S|U|1286
3J6Y|1|1S|A|1287
3J6Y|1|1S|G|1288
*
3J6Y|1|1S|C|1327
3J6Y|1|1S|G|1328
3J6Y|1|1S|A|1329
3J6Y|1|1S|G|1330
3J6Y|1|1S|A|1331
3J6Y|1|1S|C|1332
*
3J6Y|1|1S|G|1419
3J6Y|1|1S|C|1420
3J6Y|1|1S|A|1421
3J6Y|1|1S|A|1422
3J6Y|1|1S|U|1423
3J6Y|1|1S|A|1424
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 17
- 40S ribosomal protein S17
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- 40S ribosomal protein S3
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