J3_3J6Y_011
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_011 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.2086
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|1S|U|1293
3J6Y|1|1S|G|1294
*
3J6Y|1|1S|U|1303
3J6Y|1|1S|G|1304
3J6Y|1|1S|U|1305
3J6Y|1|1S|C|1306
*
3J6Y|1|1S|G|1318
3J6Y|1|1S|A|1319
3J6Y|1|1S|U|1320
3J6Y|1|1S|A|1321
3J6Y|1|1S|A|1322
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 17
- 40S ribosomal protein S17
- Chain S0
- 40S ribosomal protein S0
- Chain S2
- 40S ribosomal protein S2
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