J3_3J6Y_013
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 3J6Y|1|1S|U|1473, 3J6Y|1|1S|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_013 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2049
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|1S|C|1470
3J6Y|1|1S|A|1471
3J6Y|1|1S|C|1472
3J6Y|1|1S|U|1473
3J6Y|1|1S|G|1474
*
3J6Y|1|1S|C|1533
3J6Y|1|1S|G|1534
3J6Y|1|1S|U|1535
3J6Y|1|1S|G|1536
3J6Y|1|1S|C|1537
3J6Y|1|1S|U|1538
3J6Y|1|1S|G|1539
3J6Y|1|1S|G|1540
*
3J6Y|1|1S|C|1571
3J6Y|1|1S|G|1572
3J6Y|1|1S|A|1573
3J6Y|1|1S|G|1574
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 18
- 40S ribosomal protein S18
- Chain 19
- 40S ribosomal protein S19
- Chain 25
- 40S ribosomal protein S25
- Chain S5
- 40S ribosomal protein S5
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