J3_3J6Y_016
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_016 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1493
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|U|502
3J6Y|1|2S|C|503
*
3J6Y|1|2S|G|588
3J6Y|1|2S|A|589
3J6Y|1|2S|G|590
3J6Y|1|2S|G|591
3J6Y|1|2S|A|592
3J6Y|1|2S|C|593
3J6Y|1|2S|U|594
3J6Y|1|2S|G|595
3J6Y|1|2S|C|596
3J6Y|1|2S|G|597
*
3J6Y|1|2S|C|606
3J6Y|1|2S|A|607
3J6Y|1|2S|A|608
3J6Y|1|2S|G|609
3J6Y|1|2S|G|610
3J6Y|1|2S|A|611
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 72
- 60S ribosomal protein L32
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- 60S ribosomal protein L6
- Chain L7
- 60S ribosomal protein L7
Coloring options: