J3_3J6Y_020

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J6Y_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2604

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

3J6Y|1|2S|G|1230
3J6Y|1|2S|A|1231
3J6Y|1|2S|C|1232
*
3J6Y|1|2S|G|1256
3J6Y|1|2S|C|1257
3J6Y|1|2S|U|1258
3J6Y|1|2S|A|1259
3J6Y|1|2S|A|1260
3J6Y|1|2S|G|1261
3J6Y|1|2S|G|1262
*
3J6Y|1|2S|C|1277
3J6Y|1|2S|A|1278
3J6Y|1|2S|C|1279

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains