J3_3J6Y_023
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_023 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1767
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
3J6Y|1|2S|U|1526
3J6Y|1|2S|C|1527
3J6Y|1|2S|G|1528
3J6Y|1|2S|A|1529
3J6Y|1|2S|U|1530
3J6Y|1|2S|C|1531
*
3J6Y|1|2S|G|1591
3J6Y|1|2S|G|1592
3J6Y|1|2S|A|1593
3J6Y|1|2S|A|1594
3J6Y|1|2S|U|1595
*
3J6Y|1|2S|A|1612
3J6Y|1|2S|A|1613
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 74
- 60S ribosomal protein L34
- Chain 78
- 60S ribosomal protein L38
- Chain 79
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: