J3_3J6Y_040
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_040 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.2218
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|2S|U|1479
3J6Y|1|2S|G|1480
3J6Y|1|2S|A|1481
3J6Y|1|2S|A|1482
3J6Y|1|2S|G|1483
3J6Y|1|2S|U|1484
3J6Y|1|2S|G|1485
*
3J6Y|1|2S|C|1857
3J6Y|1|2S|A|1858
3J6Y|1|2S|A|1859
*
3J6Y|1|2S|U|1871
3J6Y|1|2S|C|1872
3J6Y|1|2S|U|1873
3J6Y|1|2S|A|1874
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 74
- 60S ribosomal protein L34
Coloring options: