J3_3J6Y_042
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_042 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1382
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|2S|A|1654
3J6Y|1|2S|G|1655
3J6Y|1|2S|A|1656
3J6Y|1|2S|C|1657
3J6Y|1|2S|G|1658
*
3J6Y|1|2S|C|1791
3J6Y|1|2S|C|1792
*
3J6Y|1|2S|G|1796
3J6Y|1|2S|A|1797
3J6Y|1|2S|A|1798
3J6Y|1|2S|A|1799
3J6Y|1|2S|A|1800
3J6Y|1|2S|U|1801
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 74
- 60S ribosomal protein L34
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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