J3_3J6Y_044
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 3J6Y|1|2S|C|2760, 3J6Y|1|2S|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_044 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1278
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|2S|G|2651
3J6Y|1|2S|U|2652
3J6Y|1|2S|C|2653
*
3J6Y|1|2S|G|2754
3J6Y|1|2S|C|2755
3J6Y|1|2S|C|2756
3J6Y|1|2S|U|2757
3J6Y|1|2S|A|2758
3J6Y|1|2S|U|2759
3J6Y|1|2S|C|2760
3J6Y|1|2S|G|2761
3J6Y|1|2S|A|2762
3J6Y|1|2S|U|2763
3J6Y|1|2S|C|2764
3J6Y|1|2S|C|2765
*
3J6Y|1|2S|G|2793
3J6Y|1|2S|G|2794
3J6Y|1|2S|U|2795
3J6Y|1|2S|G|2796
3J6Y|1|2S|C|2797
3J6Y|1|2S|C|2798
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 61
- 60S ribosomal protein L21
- Chain 68
- 60S ribosomal protein L28
- Chain 82
- 60S ribosomal protein L42
Coloring options: