J3_3J77_004
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J77_004 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.3877
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|1S|C|1037
3J77|1|1S|U|1038
3J77|1|1S|A|1039
*
3J77|1|1S|U|1079
3J77|1|1S|U|1080
3J77|1|1S|A|1081
3J77|1|1S|C|1082
3J77|1|1S|G|1083
*
3J77|1|1S|C|1090
3J77|1|1S|A|1091
3J77|1|1S|A|1092
3J77|1|1S|A|1093
3J77|1|1S|G|1094
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S21
- Chain 22
- 40S ribosomal protein S22
- Chain 23
- 40S ribosomal protein S23
- Chain 26
- 40S ribosomal protein S26
- Chain 27
- 40S ribosomal protein S27
- Chain S0
- 40S ribosomal protein S0
- Chain S2
- 40S ribosomal protein S2
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