J3_3J77_019

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J77_019 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3004

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|G|1230
3J77|1|2S|A|1231
3J77|1|2S|C|1232
*
3J77|1|2S|G|1256
3J77|1|2S|C|1257
3J77|1|2S|U|1258
3J77|1|2S|A|1259
3J77|1|2S|A|1260
3J77|1|2S|G|1261
3J77|1|2S|G|1262
*
3J77|1|2S|C|1277
3J77|1|2S|A|1278
3J77|1|2S|C|1279

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 62

60S ribosomal protein L12

Chain P0

60S acidic ribosomal protein P0