J3_3J77_020

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

3J77|1|2S|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J77_020 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.2187

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

3J77|1|2S|U|1479
3J77|1|2S|G|1480
3J77|1|2S|A|1481
3J77|1|2S|A|1482
3J77|1|2S|G|1483
3J77|1|2S|U|1484
3J77|1|2S|G|1485
*
3J77|1|2S|C|1857
3J77|1|2S|A|1858
3J77|1|2S|A|1859
*
3J77|1|2S|U|1871
3J77|1|2S|C|1872
3J77|1|2S|U|1873
3J77|1|2S|A|1874

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 84

60S ribosomal protein L34