3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J77_024 not in the Motif Atlas
Homologous match to J3_8C3A_008
Geometric discrepancy: 0.3855
The information below is about J3_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

3J77|1|2S|A|2432
3J77|1|2S|U|2433
3J77|1|2S|U|2434
3J77|1|2S|G|2435
*
3J77|1|2S|C|2512
3J77|1|2S|U|2513
3J77|1|2S|U|2514
3J77|1|2S|A|2515
3J77|1|2S|U|2516
3J77|1|2S|U|2517
*
3J77|1|2S|A|2590
3J77|1|2S|A|2591
3J77|1|2S|G|2592
3J77|1|2S|A|2593
3J77|1|2S|C|2594
3J77|1|2S|A|2595
3J77|1|2S|U|2596
3J77|1|2S|U|2597

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 65
60S ribosomal protein L15
Chain 86
60S ribosomal protein L36
Chain L2
60S ribosomal protein L2
Chain L8
60S ribosomal protein L8

Coloring options:


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