J3_3J77_039

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J77_039 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1387

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3J77|1|2S|A|1654
3J77|1|2S|G|1655
3J77|1|2S|A|1656
3J77|1|2S|C|1657
3J77|1|2S|G|1658
*
3J77|1|2S|C|1791
3J77|1|2S|C|1792
*
3J77|1|2S|G|1796
3J77|1|2S|A|1797
3J77|1|2S|A|1798
3J77|1|2S|A|1799
3J77|1|2S|A|1800
3J77|1|2S|U|1801

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 84

60S ribosomal protein L34

Chain 93

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2