J3_3J77_041
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 3J77|1|2S|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J77_041 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1388
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3J77|1|2S|G|2651
3J77|1|2S|U|2652
3J77|1|2S|C|2653
*
3J77|1|2S|G|2754
3J77|1|2S|C|2755
3J77|1|2S|C|2756
3J77|1|2S|U|2757
3J77|1|2S|A|2758
3J77|1|2S|U|2759
3J77|1|2S|C|2760
3J77|1|2S|G|2761
3J77|1|2S|A|2762
3J77|1|2S|U|2763
3J77|1|2S|C|2764
3J77|1|2S|C|2765
*
3J77|1|2S|G|2793
3J77|1|2S|G|2794
3J77|1|2S|U|2795
3J77|1|2S|G|2796
3J77|1|2S|C|2797
3J77|1|2S|C|2798
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 68
- 60S ribosomal protein L18
- Chain 71
- 60S ribosomal protein L21
- Chain 78
- 60S ribosomal protein L28
- Chain 92
- 60S ribosomal protein L42
- Chain PT
- Transfer RNA; tRNA
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