3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
3J77|1|2S|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J77_041 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.1388
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

3J77|1|2S|G|2651
3J77|1|2S|U|2652
3J77|1|2S|C|2653
*
3J77|1|2S|G|2754
3J77|1|2S|C|2755
3J77|1|2S|C|2756
3J77|1|2S|U|2757
3J77|1|2S|A|2758
3J77|1|2S|U|2759
3J77|1|2S|C|2760
3J77|1|2S|G|2761
3J77|1|2S|A|2762
3J77|1|2S|U|2763
3J77|1|2S|C|2764
3J77|1|2S|C|2765
*
3J77|1|2S|G|2793
3J77|1|2S|G|2794
3J77|1|2S|U|2795
3J77|1|2S|G|2796
3J77|1|2S|C|2797
3J77|1|2S|C|2798

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 68
60S ribosomal protein L18
Chain 71
60S ribosomal protein L21
Chain 78
60S ribosomal protein L28
Chain 92
60S ribosomal protein L42
Chain PT
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2654 s