J3_3J78_001

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J78_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1559

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

3J78|1|1S|A|41
3J78|1|1S|G|42
*
3J78|1|1S|C|433
3J78|1|1S|G|434
3J78|1|1S|C|435
3J78|1|1S|A|436
3J78|1|1S|A|437
3J78|1|1S|A|438
3J78|1|1S|U|439
*
3J78|1|1S|A|464
3J78|1|1S|G|465
3J78|1|1S|U|466

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 23

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9