J3_3J78_012
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 3J78|1|1S|U|1413, 3J78|1|1S|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_012 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.2278
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J78|1|1S|A|1336
3J78|1|1S|A|1337
3J78|1|1S|C|1338
*
3J78|1|1S|G|1386
3J78|1|1S|G|1387
3J78|1|1S|A|1388
3J78|1|1S|C|1389
*
3J78|1|1S|G|1412
3J78|1|1S|U|1413
3J78|1|1S|U|1414
3J78|1|1S|U|1415
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 17
- 40S ribosomal protein S17
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain RC
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain S5
- 40S ribosomal protein S5
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