J3_3J78_015
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_015 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.205
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3J78|1|2S|A|369
3J78|1|2S|U|370
3J78|1|2S|G|371
3J78|1|2S|A|372
3J78|1|2S|A|373
3J78|1|2S|A|374
3J78|1|2S|A|375
3J78|1|2S|G|376
*
3J78|1|2S|C|403
3J78|1|2S|G|404
*
3J78|1|8S|C|19
3J78|1|8S|U|20
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 76
- 60S ribosomal protein L26
- Chain 89
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
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