3D structure

PDB id
3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.3 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
3J78|1|2S|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J78_016 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.1943
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

3J78|1|2S|U|502
3J78|1|2S|C|503
*
3J78|1|2S|G|588
3J78|1|2S|A|589
3J78|1|2S|G|590
3J78|1|2S|G|591
3J78|1|2S|A|592
3J78|1|2S|C|593
3J78|1|2S|U|594
3J78|1|2S|G|595
3J78|1|2S|C|596
3J78|1|2S|G|597
*
3J78|1|2S|C|606
3J78|1|2S|A|607
3J78|1|2S|A|608
3J78|1|2S|G|609
3J78|1|2S|G|610
3J78|1|2S|A|611

Current chains

Chain 2S
25S ribosomal RNA

Nearby chains

Chain 82
60S ribosomal protein L32
Chain L4
60S ribosomal protein L4
Chain L6
60S ribosomal protein L6
Chain L7
60S ribosomal protein L7

Coloring options:


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