J3_3J78_039
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCC*GCCACCAU
- Length
- 27 nucleotides
- Bulged bases
- 3J78|1|2S|C|1556, 3J78|1|2S|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_039 not in the Motif Atlas
- Homologous match to J3_8P9A_056
- Geometric discrepancy: 0.1875
- The information below is about J3_8P9A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38098.1
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J78|1|2S|A|1537
3J78|1|2S|G|1538
3J78|1|2S|A|1539
3J78|1|2S|U|1540
3J78|1|2S|G|1541
3J78|1|2S|G|1542
*
3J78|1|2S|C|1551
3J78|1|2S|G|1552
3J78|1|2S|U|1553
3J78|1|2S|U|1554
3J78|1|2S|U|1555
3J78|1|2S|C|1556
3J78|1|2S|A|1557
3J78|1|2S|A|1558
3J78|1|2S|A|1559
3J78|1|2S|G|1560
3J78|1|2S|G|1561
3J78|1|2S|C|1562
3J78|1|2S|C|1563
*
3J78|1|2S|G|1577
3J78|1|2S|C|1578
3J78|1|2S|C|1579
3J78|1|2S|A|1580
3J78|1|2S|C|1581
3J78|1|2S|C|1582
3J78|1|2S|A|1583
3J78|1|2S|U|1584
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L25
- Chain 87
- 60S ribosomal protein L37
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
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