J3_3J79_002
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAUAG*CC*GU
- Length
- 13 nucleotides
- Bulged bases
- 3J79|1|A|U|383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1307
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|A|377
3J79|1|A|U|378
3J79|1|A|G|379
3J79|1|A|A|380
3J79|1|A|A|381
3J79|1|A|A|382
3J79|1|A|U|383
3J79|1|A|A|384
3J79|1|A|G|385
*
3J79|1|A|C|413
3J79|1|A|C|414
*
3J79|1|C|G|23
3J79|1|C|U|24
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein uL4
- Chain W
- 60S ribosomal protein uL22
- Chain Z
- 60S ribosomal protein uL24
- Chain e
- 60S ribosomal protein eL39
Coloring options: