J3_3J79_011
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGCUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_011 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1227
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
3J79|1|A|C|1675
3J79|1|A|C|1676
3J79|1|A|G|1677
3J79|1|A|C|1678
3J79|1|A|U|1679
3J79|1|A|C|1680
*
3J79|1|A|G|1734
3J79|1|A|G|1735
3J79|1|A|A|1736
3J79|1|A|A|1737
3J79|1|A|A|1738
*
3J79|1|A|U|1755
3J79|1|A|G|1756
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Y
- 60S ribosomal protein uL23
- Chain a
- 60S ribosomal protein eL34
- Chain d
- 60S ribosomal protein eL38
- Chain e
- 60S ribosomal protein eL39
Coloring options: