J3_3J79_016
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUG*CUUAU*AGACAUA
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_016 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.3224
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|U|2725
3J79|1|A|U|2726
3J79|1|A|U|2727
3J79|1|A|G|2728
*
3J79|1|A|C|2821
3J79|1|A|U|2822
3J79|1|A|U|2823
3J79|1|A|A|2824
3J79|1|A|U|2825
*
3J79|1|A|A|2930
3J79|1|A|G|2931
3J79|1|A|A|2932
3J79|1|A|C|2933
3J79|1|A|A|2934
3J79|1|A|U|2935
3J79|1|A|A|2936
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein uL2
- Chain J
- 60S ribosomal protein eL8
- Chain P
- 60S ribosomal protein eL15
- Chain b
- 60S ribosomal protein eL36
Coloring options: