J3_3J79_017
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 3J79|1|A|U|3156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_017 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0812
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3J79|1|A|G|2990
3J79|1|A|U|2991
3J79|1|A|C|2992
*
3J79|1|A|G|3093
3J79|1|A|C|3094
3J79|1|A|C|3095
3J79|1|A|U|3096
3J79|1|A|A|3097
3J79|1|A|U|3098
3J79|1|A|C|3099
3J79|1|A|G|3100
3J79|1|A|A|3101
3J79|1|A|U|3102
3J79|1|A|C|3103
3J79|1|A|C|3104
*
3J79|1|A|G|3152
3J79|1|A|G|3153
3J79|1|A|U|3154
3J79|1|A|G|3155
3J79|1|A|U|3156
3J79|1|A|C|3157
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain O
- 60S ribosomal protein uL15
- Chain S
- 60S ribosomal protein eL18
- Chain V
- 60S ribosomal protein eL21
- Chain i
- 60S ribosomal protein eL44
Coloring options: