J3_3J79_025

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUACA*UC*GAAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J79_025 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1279

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3J79|1|A|U|1809
3J79|1|A|U|1810
3J79|1|A|A|1811
3J79|1|A|C|1812
3J79|1|A|A|1813
*
3J79|1|A|U|2013
3J79|1|A|C|2014
*
3J79|1|A|G|2018
3J79|1|A|A|2019
3J79|1|A|A|2020
3J79|1|A|A|2021
3J79|1|A|A|2022
3J79|1|A|A|2023

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein uL2

Chain a

60S ribosomal protein eL34

Chain h

60S ribosomal protein eL43