J3_3J79_027
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAUACGC*GAAUG
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|C|C|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_027 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1881
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|C|C|48
3J79|1|C|C|49
*
3J79|1|C|G|62
3J79|1|C|A|63
3J79|1|C|U|64
3J79|1|C|A|65
3J79|1|C|C|66
3J79|1|C|G|67
3J79|1|C|C|68
*
3J79|1|C|G|99
3J79|1|C|A|100
3J79|1|C|A|101
3J79|1|C|U|102
3J79|1|C|G|103
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein uL23
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
Coloring options: