J3_3J7A_001
3D structure
- PDB id
- 3J7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAG*CAA*UUGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J7A_001 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.278
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J7A|1|A|A|810
3J7A|1|A|G|811
3J7A|1|A|A|812
3J7A|1|A|G|813
*
3J7A|1|A|C|823
3J7A|1|A|A|824
3J7A|1|A|A|825
*
3J7A|1|A|U|848
3J7A|1|A|U|849
3J7A|1|A|G|850
3J7A|1|A|A|851
3J7A|1|A|A|852
3J7A|1|A|U|853
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein eS24
- Chain E
- 40S ribosomal protein uS4
- Chain F
- 40S ribosomal protein eS4
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