3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J7P_023 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.1742
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

3J7P|1|S2|U|1350
3J7P|1|S2|G|1351
*
3J7P|1|S2|U|1360
3J7P|1|S2|G|1361
3J7P|1|S2|U|1362
3J7P|1|S2|C|1363
*
3J7P|1|S2|G|1375
3J7P|1|S2|A|1376
3J7P|1|S2|U|1377
3J7P|1|S2|A|1378
3J7P|1|S2|A|1379

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SA
Ribosomal protein uS2
Chain SC
Ribosomal protein uS5
Chain SR
Ribosomal protein eS17

Coloring options:


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