J3_3J7Z_005

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3J7Z|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J7Z_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1442

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3J7Z|1|A|C|1306
3J7Z|1|A|A|1307
3J7Z|1|A|A|1308
3J7Z|1|A|G|1309
*
3J7Z|1|A|C|1605
3J7Z|1|A|C|1606
3J7Z|1|A|C|1607
3J7Z|1|A|A|1608
3J7Z|1|A|A|1609
3J7Z|1|A|A|1610
3J7Z|1|A|C|1611
*
3J7Z|1|A|G|1620
3J7Z|1|A|U|1621
3J7Z|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34