J3_3J7Z_018

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J7Z_018 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1268

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

3J7Z|1|A|G|1055
3J7Z|1|A|G|1056
3J7Z|1|A|A|1057
*
3J7Z|1|A|U|1081
3J7Z|1|A|U|1082
3J7Z|1|A|U|1083
3J7Z|1|A|A|1084
3J7Z|1|A|A|1085
3J7Z|1|A|A|1086
3J7Z|1|A|G|1087
*
3J7Z|1|A|C|1102
3J7Z|1|A|A|1103
3J7Z|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 5

50S ribosomal protein L10

Chain I

50S ribosomal protein L11