J3_3J81_013
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAGAUAAAAAAUCAAUG*CUCCUUG*CAUA
- Length
- 28 nucleotides
- Bulged bases
- 3J81|1|2|C|239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J81_013 not in the Motif Atlas
- Homologous match to J3_8C3A_084
- Geometric discrepancy: 0.5721
- The information below is about J3_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67192.1
- Basepair signature
- cWW-F-F-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J81|1|2|U|211
3J81|1|2|A|212
3J81|1|2|G|213
3J81|1|2|A|214
3J81|1|2|U|215
3J81|1|2|A|216
3J81|1|2|A|217
3J81|1|2|A|218
3J81|1|2|A|219
3J81|1|2|A|220
3J81|1|2|A|221
3J81|1|2|U|222
3J81|1|2|C|223
3J81|1|2|A|224
3J81|1|2|A|225
3J81|1|2|U|226
3J81|1|2|G|227
*
3J81|1|2|C|236
3J81|1|2|U|237
3J81|1|2|C|238
3J81|1|2|C|239
3J81|1|2|U|240
3J81|1|2|U|241
3J81|1|2|G|242
*
3J81|1|2|C|249
3J81|1|2|A|250
3J81|1|2|U|251
3J81|1|2|A|252
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- eS4
- Chain G
- eS6
- Chain I
- eS8
- Chain L
- uS17
Coloring options: