J3_8C3A_084
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAGAUAAAAAAUCAAUG*CUCUUUG*CAUA
- Length
- 28 nucleotides
- Bulged bases
- 8C3A|1|CM|A|215, 8C3A|1|CM|A|216, 8C3A|1|CM|U|238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67192.1
- Basepair signature
- cWW-F-F-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8C3A|1|CM|U|210
8C3A|1|CM|A|211
8C3A|1|CM|G|212
8C3A|1|CM|A|213
8C3A|1|CM|U|214
8C3A|1|CM|A|215
8C3A|1|CM|A|216
8C3A|1|CM|A|217
8C3A|1|CM|A|218
8C3A|1|CM|A|219
8C3A|1|CM|A|220
8C3A|1|CM|U|221
8C3A|1|CM|C|222
8C3A|1|CM|A|223
8C3A|1|CM|A|224
8C3A|1|CM|U|225
8C3A|1|CM|G|226
*
8C3A|1|CM|C|235
8C3A|1|CM|U|236
8C3A|1|CM|C|237
8C3A|1|CM|U|238
8C3A|1|CM|U|239
8C3A|1|CM|U|240
8C3A|1|CM|G|241
*
8C3A|1|CM|C|248
8C3A|1|CM|A|249
8C3A|1|CM|U|250
8C3A|1|CM|A|251
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
- Chain CY
- 40S ribosomal protein S11A
Coloring options: