J3_3J8G_006

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3J8G|1|B|C|1607, 3J8G|1|B|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J8G_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.459

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

3J8G|1|B|C|1306
3J8G|1|B|A|1307
3J8G|1|B|A|1308
3J8G|1|B|G|1309
*
3J8G|1|B|C|1605
3J8G|1|B|C|1606
3J8G|1|B|C|1607
3J8G|1|B|A|1608
3J8G|1|B|A|1609
3J8G|1|B|A|1610
3J8G|1|B|C|1611
*
3J8G|1|B|G|1620
3J8G|1|B|U|1621
3J8G|1|B|G|1622

Current chains

Chain B

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34