J3_3J8G_007

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J8G_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1962

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

3J8G|1|B|C|2091
3J8G|1|B|U|2092
3J8G|1|B|G|2093
*
3J8G|1|B|C|2196
3J8G|1|B|U|2197
3J8G|1|B|A|2198
3J8G|1|B|A|2199
3J8G|1|B|C|2200
*
3J8G|1|B|G|2223
3J8G|1|B|G|2224
3J8G|1|B|A|2225
3J8G|1|B|C|2226
3J8G|1|B|A|2227
3J8G|1|B|G|2228

Current chains

Chain B

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9