J3_3J9M_006

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

3J9M|1|A|A|3005, 3J9M|1|A|U|3006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9M_006 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1001

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

3J9M|1|A|C|3004
3J9M|1|A|A|3005
3J9M|1|A|U|3006
3J9M|1|A|C|3007
*
3J9M|1|A|G|3032
3J9M|1|A|U|3033
3J9M|1|A|U|3034
*
3J9M|1|A|A|3048
3J9M|1|A|U|3049
3J9M|1|A|U|3050
3J9M|1|A|A|3051
3J9M|1|A|A|3052
3J9M|1|A|A|3053
3J9M|1|A|G|3054

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

uL3m

Chain L

uL14m

Chain r

mL66 (bS18a)