J3_3J9M_013

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCAG*CGCAAGU*AAAGACG

Length

20 nucleotides

Bulged bases

3J9M|1|AA|U|1270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9M_013 not in the Motif Atlas

Homologous match to J3_4LFB_007

Geometric discrepancy: 0.5807

The information below is about J3_4LFB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J9M|1|AA|C|1268
3J9M|1|AA|U|1269
3J9M|1|AA|U|1270
3J9M|1|AA|C|1271
3J9M|1|AA|A|1272
3J9M|1|AA|G|1273
*
3J9M|1|AA|C|1302
3J9M|1|AA|G|1303
3J9M|1|AA|C|1304
3J9M|1|AA|A|1305
3J9M|1|AA|A|1306
3J9M|1|AA|G|1307
3J9M|1|AA|U|1308
*
3J9M|1|AA|A|1317
3J9M|1|AA|A|1318
3J9M|1|AA|A|1319
3J9M|1|AA|G|1320
3J9M|1|AA|A|1321
3J9M|1|AA|C|1322
3J9M|1|AA|G|1323

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A1

mS35

Chain AC

uS3m

Chain AD

uS5m

Chain AG

uS9m

Chain AH

uS10m

Chain AK

uS14m