J3_3J9W_003
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 3J9W|1|AA|U|732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1607
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|U|681
3J9W|1|AA|G|682
*
3J9W|1|AA|C|726
3J9W|1|AA|A|727
3J9W|1|AA|C|728
3J9W|1|AA|C|729
3J9W|1|AA|A|730
3J9W|1|AA|G|731
3J9W|1|AA|U|732
3J9W|1|AA|G|733
3J9W|1|AA|G|734
*
3J9W|1|AA|C|741
3J9W|1|AA|G|742
3J9W|1|AA|A|743
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein bS6
- Chain AK
- 30S ribosomal protein uS11
- Chain AR
- 30S ribosomal protein bS18
- Chain AY
- mRNA
- Chain BD
- 50S ribosomal protein uL2
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