J3_3J9W_009
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_009 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1337
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3J9W|1|AA|C|1073
3J9W|1|AA|G|1074
3J9W|1|AA|U|1075
3J9W|1|AA|C|1076
3J9W|1|AA|A|1077
3J9W|1|AA|G|1078
*
3J9W|1|AA|C|1117
3J9W|1|AA|G|1118
3J9W|1|AA|C|1119
3J9W|1|AA|A|1120
3J9W|1|AA|A|1121
3J9W|1|AA|C|1122
3J9W|1|AA|C|1123
*
3J9W|1|AA|G|1196
3J9W|1|AA|A|1197
3J9W|1|AA|U|1198
3J9W|1|AA|G|1199
3J9W|1|AA|A|1200
3J9W|1|AA|C|1201
3J9W|1|AA|G|1202
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein uS3
- Chain AE
- 30S ribosomal protein uS5
- Chain AI
- 30S ribosomal protein uS9
- Chain AJ
- 30S ribosomal protein uS10
- Chain AN
- 30S ribosomal protein uS14
Coloring options: