J3_3J9W_010

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_010 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1373

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3J9W|1|AA|U|1083
3J9W|1|AA|G|1084
*
3J9W|1|AA|U|1093
3J9W|1|AA|G|1094
3J9W|1|AA|U|1095
3J9W|1|AA|U|1096
3J9W|1|AA|G|1097
*
3J9W|1|AA|C|1108
3J9W|1|AA|G|1109
3J9W|1|AA|C|1110
3J9W|1|AA|A|1111
3J9W|1|AA|A|1112

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein uS2

Chain AE

30S ribosomal protein uS5