J3_3J9W_013

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_013 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.2078

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|G|30
3J9W|1|BA|C|31
*
3J9W|1|BA|G|521
3J9W|1|BA|U|522
3J9W|1|BA|G|523
3J9W|1|BA|A|524
3J9W|1|BA|A|525
3J9W|1|BA|A|526
3J9W|1|BA|A|527
3J9W|1|BA|G|528
*
3J9W|1|BA|C|555
3J9W|1|BA|C|556

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein bL20

Chain BX

50S ribosomal protein uL24