3D structure

PDB id
3J9W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J9W_018 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.3017
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

3J9W|1|BA|G|1101
3J9W|1|BA|G|1102
3J9W|1|BA|A|1103
*
3J9W|1|BA|U|1127
3J9W|1|BA|U|1128
3J9W|1|BA|U|1129
3J9W|1|BA|A|1130
3J9W|1|BA|A|1131
3J9W|1|BA|A|1132
3J9W|1|BA|G|1133
*
3J9W|1|BA|C|1148
3J9W|1|BA|A|1149
3J9W|1|BA|C|1150

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B8
50S ribosomal protein bL36
Chain BJ
50S ribosomal protein uL10
Chain BK
50S ribosomal protein uL11

Coloring options:


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