J3_3J9W_018
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_018 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.3017
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J9W|1|BA|G|1101
3J9W|1|BA|G|1102
3J9W|1|BA|A|1103
*
3J9W|1|BA|U|1127
3J9W|1|BA|U|1128
3J9W|1|BA|U|1129
3J9W|1|BA|A|1130
3J9W|1|BA|A|1131
3J9W|1|BA|A|1132
3J9W|1|BA|G|1133
*
3J9W|1|BA|C|1148
3J9W|1|BA|A|1149
3J9W|1|BA|C|1150
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B8
- 50S ribosomal protein bL36
- Chain BJ
- 50S ribosomal protein uL10
- Chain BK
- 50S ribosomal protein uL11
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