J3_3J9W_019

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_019 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.1417

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

3J9W|1|BA|C|1337
3J9W|1|BA|G|1338
3J9W|1|BA|A|1339
3J9W|1|BA|A|1340
3J9W|1|BA|U|1341
3J9W|1|BA|G|1342
*
3J9W|1|BA|C|1670
3J9W|1|BA|G|1671
3J9W|1|BA|A|1672
*
3J9W|1|BA|U|1684
3J9W|1|BA|A|1685
3J9W|1|BA|A|1686
3J9W|1|BA|G|1687

Current chains

Chain BA

23S ribosomal RNA

Nearby chains