J3_3J9W_020

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

3J9W|1|BA|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_020 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.3323

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3J9W|1|BA|C|1344
3J9W|1|BA|U|1345
3J9W|1|BA|A|1346
3J9W|1|BA|A|1347
3J9W|1|BA|G|1348
*
3J9W|1|BA|C|1650
3J9W|1|BA|G|1651
3J9W|1|BA|C|1652
3J9W|1|BA|A|1653
3J9W|1|BA|A|1654
3J9W|1|BA|A|1655
3J9W|1|BA|C|1656
*
3J9W|1|BA|G|1665
3J9W|1|BA|U|1666
3J9W|1|BA|A|1667
3J9W|1|BA|G|1668

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein bL34