J3_3J9W_029
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_029 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.1169
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|C|946
3J9W|1|AA|A|947
3J9W|1|AA|A|948
3J9W|1|AA|G|949
*
3J9W|1|AA|C|1353
3J9W|1|AA|U|1354
3J9W|1|AA|A|1355
3J9W|1|AA|G|1356
3J9W|1|AA|U|1357
3J9W|1|AA|A|1358
3J9W|1|AA|A|1359
*
3J9W|1|AA|U|1381
3J9W|1|AA|G|1382
3J9W|1|AA|A|1383
3J9W|1|AA|A|1384
3J9W|1|AA|U|1385
3J9W|1|AA|A|1386
3J9W|1|AA|C|1387
3J9W|1|AA|G|1388
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal protein uS7
- Chain AI
- 30S ribosomal protein uS9
Coloring options: