J3_3J9W_030
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 3J9W|1|AA|A|985, 3J9W|1|AA|G|986
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_030 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1196
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|U|965
3J9W|1|AA|U|966
3J9W|1|AA|U|967
3J9W|1|AA|A|968
3J9W|1|AA|A|969
3J9W|1|AA|U|970
3J9W|1|AA|U|971
3J9W|1|AA|C|972
*
3J9W|1|AA|G|983
3J9W|1|AA|A|984
3J9W|1|AA|A|985
3J9W|1|AA|G|986
3J9W|1|AA|A|987
3J9W|1|AA|A|988
3J9W|1|AA|C|989
3J9W|1|AA|C|990
3J9W|1|AA|U|991
3J9W|1|AA|U|992
3J9W|1|AA|A|993
3J9W|1|AA|C|994
*
3J9W|1|AA|G|1230
3J9W|1|AA|G|1231
3J9W|1|AA|C|1232
3J9W|1|AA|U|1233
3J9W|1|AA|A|1234
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AJ
- 30S ribosomal protein uS10
- Chain AM
- 30S ribosomal protein uS13
- Chain AN
- 30S ribosomal protein uS14
- Chain AS
- 30S ribosomal protein uS19
Coloring options: