J3_3J9W_034
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 3J9W|1|BA|G|550, 3J9W|1|BA|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_034 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2446
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J9W|1|BA|G|30
3J9W|1|BA|C|31
*
3J9W|1|BA|G|521
3J9W|1|BA|U|522
3J9W|1|BA|G|523
3J9W|1|BA|A|524
3J9W|1|BA|A|525
3J9W|1|BA|A|526
3J9W|1|BA|A|527
3J9W|1|BA|G|528
3J9W|1|BA|C|529
3J9W|1|BA|A|530
3J9W|1|BA|C|531
*
3J9W|1|BA|G|542
3J9W|1|BA|A|543
3J9W|1|BA|G|544
3J9W|1|BA|U|545
3J9W|1|BA|G|546
3J9W|1|BA|A|547
3J9W|1|BA|A|548
3J9W|1|BA|A|549
3J9W|1|BA|G|550
3J9W|1|BA|A|551
3J9W|1|BA|G|552
3J9W|1|BA|A|553
3J9W|1|BA|U|554
3J9W|1|BA|C|555
3J9W|1|BA|C|556
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AZ
- MifM
- Chain BT
- 50S ribosomal protein bL20
- Chain BV
- 50S ribosomal protein uL22
- Chain BW
- 50S ribosomal protein uL23
- Chain BX
- 50S ribosomal protein uL24
Coloring options: