J3_3J9W_035
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 3J9W|1|BA|U|495, 3J9W|1|BA|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_035 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1205
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
3J9W|1|BA|C|32
3J9W|1|BA|U|33
3J9W|1|BA|U|34
3J9W|1|BA|G|35
*
3J9W|1|BA|C|492
3J9W|1|BA|G|493
3J9W|1|BA|A|494
3J9W|1|BA|U|495
3J9W|1|BA|A|496
3J9W|1|BA|G|497
3J9W|1|BA|U|498
3J9W|1|BA|G|499
3J9W|1|BA|A|500
3J9W|1|BA|A|501
3J9W|1|BA|C|502
3J9W|1|BA|C|503
3J9W|1|BA|A|504
3J9W|1|BA|G|505
3J9W|1|BA|U|506
3J9W|1|BA|A|507
3J9W|1|BA|C|508
*
3J9W|1|BA|G|515
3J9W|1|BA|G|516
3J9W|1|BA|A|517
3J9W|1|BA|A|518
3J9W|1|BA|A|519
3J9W|1|BA|G|520
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AZ
- MifM
- Chain B6
- 50S ribosomal protein bL34
- Chain BF
- 50S ribosomal protein uL4
- Chain BT
- 50S ribosomal protein bL20
- Chain BW
- 50S ribosomal protein uL23
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