J3_3J9W_037
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCGGGAC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 3J9W|1|BA|A|1423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_037 not in the Motif Atlas
- Homologous match to J3_4WF9_016
- Geometric discrepancy: 0.1641
- The information below is about J3_4WF9_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
3J9W|1|BA|U|1383
3J9W|1|BA|C|1384
3J9W|1|BA|G|1385
3J9W|1|BA|G|1386
3J9W|1|BA|G|1387
3J9W|1|BA|A|1388
3J9W|1|BA|C|1389
*
3J9W|1|BA|G|1420
3J9W|1|BA|A|1421
3J9W|1|BA|C|1422
3J9W|1|BA|A|1423
3J9W|1|BA|A|1424
*
3J9W|1|BA|U|1441
3J9W|1|BA|A|1442
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B6
- 50S ribosomal protein bL34
- Chain BW
- 50S ribosomal protein uL23
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