3D structure

PDB id
3J9W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J9W_038 not in the Motif Atlas
Homologous match to J3_7A0S_019
Geometric discrepancy: 0.1338
The information below is about J3_7A0S_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

3J9W|1|BA|G|1470
3J9W|1|BA|G|1471
3J9W|1|BA|G|1472
3J9W|1|BA|A|1473
3J9W|1|BA|C|1474
3J9W|1|BA|G|1475
*
3J9W|1|BA|C|1612
3J9W|1|BA|C|1613
*
3J9W|1|BA|G|1616
3J9W|1|BA|A|1617
3J9W|1|BA|A|1618
3J9W|1|BA|A|1619
3J9W|1|BA|A|1620
3J9W|1|BA|G|1621
3J9W|1|BA|C|1622

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BD
50S ribosomal protein uL2

Coloring options:


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