J3_3J9W_038
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_038 not in the Motif Atlas
- Homologous match to J3_7A0S_019
- Geometric discrepancy: 0.1338
- The information below is about J3_7A0S_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|BA|G|1470
3J9W|1|BA|G|1471
3J9W|1|BA|G|1472
3J9W|1|BA|A|1473
3J9W|1|BA|C|1474
3J9W|1|BA|G|1475
*
3J9W|1|BA|C|1612
3J9W|1|BA|C|1613
*
3J9W|1|BA|G|1616
3J9W|1|BA|A|1617
3J9W|1|BA|A|1618
3J9W|1|BA|A|1619
3J9W|1|BA|A|1620
3J9W|1|BA|G|1621
3J9W|1|BA|C|1622
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein uL2
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